Functional bioinformatics for Arabidopsis thaliana
نویسندگان
چکیده
منابع مشابه
Functional bioinformatics for Arabidopsis thaliana
MOTIVATION The genome of Arabidopsis thaliana, which has the best understood plant genome, still has approximately one-third of its genes with no functional annotation at all from either MIPS or TAIR. We have applied our Data Mining Prediction (DMP) method to the problem of predicting the functional classes of these protein sequences. This method is based on using a hybrid machine-learning/data...
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Apomixis is associated with occurring in hybrid and polyploid plants. Here a model is tested wherein facultative apomixis might be achieved by impairing intracellular stress-signaling via a hybridization induced miss-regulation of ribosome biogenesis. The HDA6 gene knockout globally up-regulates ribosome biogenesis in Arabidopsis thaliana. Embryological analysis revealed reduced meiocyte initia...
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Transposable elements (TEs) and their relics play major roles in genome evolution. However, mobilization of TEs is usually deleterious and strongly repressed. In plants and mammals, this repression is typically associated with DNA methylation, but the relationship between this epigenetic mark and TE sequences has not been investigated systematically. Here, we present an improved annotation of T...
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انتقال از رشد رویشی به فاز زایشی از تحولات مهم در زندگی گیاهان می‌باشد. این پدیده در گیاهان عالی تحت تاثیر بسیاری از عوامل ژنتیکی و فیزیولوژیکی می‌باشد. شناسایی این عوامل یکی از اهداف مهم در اصلاح بسیاری از گیاهان می‌باشد. در دهه‌های اخیر گیاه آرابیدوپسیس به عنوان یک گیاه مدل در بسیاری از مطالعات مربوط به عمل گلدهی به کار رفته است و بسیاری از مسیرهای مربوط به کنترل گلدهی در این گیاه مشخص شده اس...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2006
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btl051